![]() ^ Andersson LS, Juras R, Ramsey DT, Eason-Butler J, Ewart S, Cothran G, Lindgren G (2008)."Direct detection of methylation in genomic DNA". ^ Bart A, van Passel MWJ, van Amsterdam K, van der Ende A (2005)."Microeukaryote Community Patterns along an O2/H2S Gradient in a Supersulfidic Anoxic Fjord (Framvaren, Norway)'Ć". ^ Behnke A, Bunge J, Barger K, Breiner H, Alla V, Stoeck T (2006)."MHC class I characterization of Indonesian cynomolgus macaques". ^ Pendley CJ, Becker EA, Karl JA, Blasky AJ, Wiseman RW, Hughes AL, O'Connor SL, O'Connor DH (2008)."Frequent Intrapatient Recombination between Human Immunodeficiency Virus Type 1 R5 and X4 Envelopes: Implications for Coreceptor Switch'ñø". ^ Mild M, Esbjörnsson J, Fenyö EM, Medstrand P (2007)."Severe anaemia is not associated with HIV-1 env gene characteristics in Malawian children". ^ Calis JC, Rotteveel HP, van der Kuyl AC, Zorgdrager F, Kachala D, van Hensbroek MB, Cornelissen M (2008)."Residual Human Immunodeficiency Virus Type 1 Viremia in Some Patients on Antiretroviral Therapy Is Dominated by a Small Number of Invariant Clones Rarely Found in Circulating CD4+ T Cells'Ć". ^ Bailey JR, Sedaghat AR, Kieffer T, Brennan T, Lee PK, Wind-Rotolo M, Haggerty CM, Kamireddi AR, Liu Y, Lee J, Persaud D, Gallant JE, Cofrancesco J, Quinn TC, Wilke CO, Ray SC, Siliciano JD, Nettles RE, Siliciano RF (2006).Citations cover a wide variety of biomedical research areas, including HIV research, biogeography and environmental biology, DNA methylation studies, genetic diseases, clinical microbiology, and evolution research and phylogenetics. In April 2009, CodonCode Aligner had been cited in more than 400 scientific publications. The first beta version of CodonCode Aligner was released in April 2003, followed by the first full version in June 2003. These findings may be used as part of marker-assisted selection in tilapia breeding programmes.Features include chromatogram editing, end clipping, and vector trimming, sequence assembly and contig editing, aligning cDNA against genomic templates, sequence alignment and editing, alignment of contigs to each other with ClustalW, MUSCLE, or built-in algorithms, mutation detection, including detection of heterozygous single-nucleotide polymorphism, analysis of heterozygous insertions and deletions, start online BLAST searches, restriction analysis (find and view restriction cut sites), trace sharpening, and support for Phred, Phrap, ClustalW, and MUSCLE. Genotypes with higher additive genetic values for weight were identified in the Chitralada strain, suggesting a possible impact of these additive effects of the GH SNP genotype on the growth rate of Nile tilapia. Single nucleotide polymorphisms 6-10 were also found to be significantly associated with growth ( p-value < .05). In all weight recordings, five genotype blocks were significantly associated with the highest weights. A total of 10 SNPs were identified, nine in the proximal promoter and one located in the 5′ UTR, forming 10 genotype blocks. Association between SNPs and growth rate was statistically evaluated using a univariate linear mixed model that included both fixed and random effects. ![]() Genotype blocks or sets of SNP genotypes and frequencies were also estimated. Allele and genotype frequencies were estimated for each SNP and genotype. The targeted regions were amplified, sequenced, aligned and screened for the presence of SNPs thereafter, performance tests were used to check for the association between SNPs and weight. The present study aimed to identify single nucleotide polymorphisms (SNPs) in GH gene regions to evaluate the association of SNP variations with the growth rate of two Nile tilapia: Oreochromis niloticus (Linnaeus, 1758) strains. Polymorphisms in the growth hormone (GH) gene that is associated with the growth rate of farmed fish have been the target of many breeding programmes.
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